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Stefanie Muff

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Stefanie Muff

Professor
Department of Mathematical Sciences

stefanie.muff@ntnu.no
Sentralbygg 2, 1040, Gløshaugen, Alfred Getz' vei 1
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Publications Teaching Outreach

Publications

  • Chronological
  • By category
  • See all publications in Cristin

2024

  • Singsaas, Øyvind; Muff, Stefanie. (2024) Neural networks for genomic prediction in the wild. Norges teknisk-naturvitenskapelige universitet
    Masters thesis
  • Nafstad, Ådne Messel; Jensen, Henrik; Rønning, Bernt; Muff, Stefanie; Stawski, Clare ; Räsänen, Katja. (2024) Ecological and evolutionary role of resting metabolic rate in wild house sparrow populations. Norges teknisk-naturvitenskapelige universitet
    Doctoral dissertation
  • Skarstein, Emma Sofie; Bastos, Leonardo Soares; Rue, Håvard; Muff, Stefanie. (2024) Bayesian models for missing and misclassified variables using integrated nested Laplace approximations. arXiv.org
    Academic article
  • Skarstein, Emma Sofie; Muff, Stefanie. (2024) inlamemi: An R package for missing data imputation and measurement error modelling using INLA. arXiv.org
    Academic article
  • Saatoglu, Fikriye Dilan; Lundregan, Sarah; Fetterplace, Evelyn; Goedert, Debora; Husby, Arild; Niskanen, Alina Katariina. (2024) The genetic basis of dispersal in a vertebrate metapopulation. Molecular Ecology
    Academic article
  • Aspheim, Janne Cathrin Hetle; Aase, Kenneth; Bolstad, Geir Hysing; Jensen, Henrik; Muff, Stefanie. (2024) Bayesian marker-based principal component ridge regression – a flexible multipurpose framework for quantitative genetics in wild study systems. bioRxiv
    Academic article

2023

  • Nafstad, Ådne Messel; Rønning, Bernt; Aase, Kenneth; Ringsby, Thor Harald; Hagen, Ingerid Julie; Ranke, Peter Sjolte. (2023) Spatial variation in the evolutionary potential and constraints of basal metabolic rate and body mass in a wild bird. Journal of Evolutionary Biology
    Academic article
  • Arce Guillen, Rafael; Lindgren, Finn Kristian; Muff, Stefanie; Glass, Thomas W.; Breed, Greg A.; Schlägel, Ulrike E.. (2023) Accounting for unobserved spatial variation in step selection analyses of animal movement via spatial random effects. Methods in Ecology and Evolution
    Academic article
  • Skarstein, Emma Sofie; Martino, Sara; Muff, Stefanie. (2023) A joint Bayesian framework for missing data and measurement error using integrated nested Laplace approximations. Biometrical Journal
    Academic article

2022

  • Egli, Mathias; Deforth, Manja; Keiser, Stefanie; Meyenberger, Patrick; Muff, Stefanie; Witt, Claudia M.. (2022) Effectiveness of hypnosis in third molar extraction: A randomized controlled trial (HypMol). Journal of Pain
    Academic article
  • Muff, Stefanie; Nilsen, Erlend Birkeland; O'Hara, Robert B.; Nater, Chloe Rebecca. (2022) Response to ‘Why P-values are not measures of evidence’ by D. Lakens. Trends in Ecology & Evolution
    Letter to the editor
  • Aase, Kenneth; Jensen, Henrik; Muff, Stefanie. (2022) Genomic estimation of quantitative genetic parameters in wild admixed populations. Methods in Ecology and Evolution
    Academic article
  • Muff, Stefanie; Nilsen, Erlend Birkeland; Nater, Chloe Rebecca; O'Hara, Robert B.. (2022) Joint reply to 'Rewriting results in the language of compatibility' by V. Amrhein and S. Greenland, and to 'The evidence contained in the P-value is context-dependent' by F. Hartig and F. Barraquand. Trends in Ecology & Evolution
    Letter to the editor

2021

  • Muff, Stefanie; Nilsen, Erlend Birkeland; OHara, Robert Brian; Nater, Chloe Rebecca. (2021) Rewriting results sections in the language of evidence. Trends in Ecology & Evolution
    Academic literature review
  • Aase, Kenneth; Muff, Stefanie. (2021) Genetic Group Animal Models in the Genomics Era. Norwegian University of Science and Technology
    Masters thesis
  • Barth, Jürgen; Muff, Stefanie; Kern, Alexandra; Zieger, Anja; Keiser, Stefanie; Zoller, Marco. (2021) Effect of Briefing on Acupuncture Treatment Outcome Expectations, Pain, and Adverse Side Effects among Patients with Chronic Low Back Pain: A Randomized Clinical Trial. JAMA Network Open
    Academic article
  • Reid, Jane Margaret; Arcese, Peter; Nietlisbach, Pirmin; Wolak, Matthew; Muff, Stefanie; Dickel, Lisa. (2021) Immigration counter-acts local micro-evolution of a major fitness component: migration-selection balance in free-living song sparrows. Evolution Letters
    Academic article

2020

  • Niskanen, Alina Katariina; Billing, Anna Maria; Holand, Håkon; Hagen, Ingerid Julie; Araya-Ajoy, Yimen; Husby, Arild. (2020) Consistent scaling of inbreeding depression in space and time in a house sparrow metapopulation. Proceedings of the National Academy of Sciences of the United States of America (PNAS)
    Academic article
  • Lundregan, Sarah L.; Niskanen, Alina K.; Muff, Stefanie; Holand, Håkon; Kvalnes, Thomas; Ringsby, Thor-Harald. (2020) Resistance to gapeworm parasite has both additive and dominant genetic components in house sparrows, with evolutionary consequences for ability to respond to parasite challenge. Molecular Ecology
    Academic article

2019

  • Nietlisbach, Pirmin; Muff, Stefanie; Reid, Jane Margaret; Whitlock, Michael; Keller, Lukas F.. (2019) Nonequivalent lethal equivalents: Models and inbreeding metrics for unbiased estimation of inbreeding load. Evolutionary Applications
    Academic article
  • Muff, Stefanie; Niskanen, Alina Katariina; Saatoglu, Dilan; Keller, Lukas; Jensen, Henrik. (2019) Animal models with group-specific additive genetic variances: extending genetic group models. Genetics Selection Evolution
    Academic article
  • Muff, Stefanie; Signer, Johannes; Fieberg, John. (2019) Accounting for individual‐specific variation in habitat‐selection studies: Efficient estimation of mixed‐effects models using Bayesian or frequentist computation. Journal of Animal Ecology
    Academic article
  • Bozzuto, Claudio; Biebach, Iris; Muff, Stefanie; Ives, Anothony R.; Keller, Lukas F.. (2019) Inbreeding reduces long-term growth of Alpine ibex populations. Nature Ecology and Evolution
    Academic article
  • Weinberger, Irene; Muff, Stefanie; Kranz, Andreas; Bontadina, Fabio. (2019) Riparian vegetation provides crucial shelter for resting otters in a human-dominated landscape. Mammalian Biology
    Academic article
  • Muff, Stefanie. (2019) Book review for "Bayesian Regression Modeling with INLA" by Xiaofeng Wang, Yu Ryan Yue, and Julian J. Faraway. Journal of the American Statistical Association
    Book review
  • Nietlisbach, Pirmin; Muff, Stefanie; Reid, Jane M.; Whitlock, Michael; Keller, Lukas F.. (2019) Nonequivalent lethal equivalents: Models and inbreeding metrics for unbiased estimation of inbreeding load . Evolutionary Applications
    Academic article
  • Bächinger, D.; Brühlmann, C.; Honegger, T.; Michalopoulou, E.; Monge Naldi, A.; Wettstein, V.G.. (2019) Endotype-Phenotype Patterns in Meniere’s Disease Based on Gadolinium-Enhanced MRI of the Vestibular Aqueduct. Frontiers in Neurology
    Academic article
  • Ponzi, Erica; Keller, Lukas F.; Muff, Stefanie. (2019) The simulation extrapolation technique meets ecology and evolution: A general and intuitive method to account for measurement error. Methods in Ecology and Evolution
    Academic article

2018

  • Ponzi, Erica; Keller, Lukas F.; Bonnet, Timothee; Muff, Stefanie. (2018) eritability, selection, and the response to selection in the presence of phenotypic measurement error: effects, cures, and the role of repeated measurements. Evolution
    Academic article
  • Muff, Stefanie; Puhan, Milo A.; Held, Leonhard. (2018) Bias away from the Null due to miscounted outcomes? A case study on the TORCH trial. Statistical Methods in Medical Research
    Academic article

Journal publications

  • Skarstein, Emma Sofie; Bastos, Leonardo Soares; Rue, Håvard; Muff, Stefanie. (2024) Bayesian models for missing and misclassified variables using integrated nested Laplace approximations. arXiv.org
    Academic article
  • Skarstein, Emma Sofie; Muff, Stefanie. (2024) inlamemi: An R package for missing data imputation and measurement error modelling using INLA. arXiv.org
    Academic article
  • Saatoglu, Fikriye Dilan; Lundregan, Sarah; Fetterplace, Evelyn; Goedert, Debora; Husby, Arild; Niskanen, Alina Katariina. (2024) The genetic basis of dispersal in a vertebrate metapopulation. Molecular Ecology
    Academic article
  • Aspheim, Janne Cathrin Hetle; Aase, Kenneth; Bolstad, Geir Hysing; Jensen, Henrik; Muff, Stefanie. (2024) Bayesian marker-based principal component ridge regression – a flexible multipurpose framework for quantitative genetics in wild study systems. bioRxiv
    Academic article
  • Nafstad, Ådne Messel; Rønning, Bernt; Aase, Kenneth; Ringsby, Thor Harald; Hagen, Ingerid Julie; Ranke, Peter Sjolte. (2023) Spatial variation in the evolutionary potential and constraints of basal metabolic rate and body mass in a wild bird. Journal of Evolutionary Biology
    Academic article
  • Arce Guillen, Rafael; Lindgren, Finn Kristian; Muff, Stefanie; Glass, Thomas W.; Breed, Greg A.; Schlägel, Ulrike E.. (2023) Accounting for unobserved spatial variation in step selection analyses of animal movement via spatial random effects. Methods in Ecology and Evolution
    Academic article
  • Skarstein, Emma Sofie; Martino, Sara; Muff, Stefanie. (2023) A joint Bayesian framework for missing data and measurement error using integrated nested Laplace approximations. Biometrical Journal
    Academic article
  • Egli, Mathias; Deforth, Manja; Keiser, Stefanie; Meyenberger, Patrick; Muff, Stefanie; Witt, Claudia M.. (2022) Effectiveness of hypnosis in third molar extraction: A randomized controlled trial (HypMol). Journal of Pain
    Academic article
  • Muff, Stefanie; Nilsen, Erlend Birkeland; O'Hara, Robert B.; Nater, Chloe Rebecca. (2022) Response to ‘Why P-values are not measures of evidence’ by D. Lakens. Trends in Ecology & Evolution
    Letter to the editor
  • Aase, Kenneth; Jensen, Henrik; Muff, Stefanie. (2022) Genomic estimation of quantitative genetic parameters in wild admixed populations. Methods in Ecology and Evolution
    Academic article
  • Muff, Stefanie; Nilsen, Erlend Birkeland; Nater, Chloe Rebecca; O'Hara, Robert B.. (2022) Joint reply to 'Rewriting results in the language of compatibility' by V. Amrhein and S. Greenland, and to 'The evidence contained in the P-value is context-dependent' by F. Hartig and F. Barraquand. Trends in Ecology & Evolution
    Letter to the editor
  • Muff, Stefanie; Nilsen, Erlend Birkeland; OHara, Robert Brian; Nater, Chloe Rebecca. (2021) Rewriting results sections in the language of evidence. Trends in Ecology & Evolution
    Academic literature review
  • Barth, Jürgen; Muff, Stefanie; Kern, Alexandra; Zieger, Anja; Keiser, Stefanie; Zoller, Marco. (2021) Effect of Briefing on Acupuncture Treatment Outcome Expectations, Pain, and Adverse Side Effects among Patients with Chronic Low Back Pain: A Randomized Clinical Trial. JAMA Network Open
    Academic article
  • Reid, Jane Margaret; Arcese, Peter; Nietlisbach, Pirmin; Wolak, Matthew; Muff, Stefanie; Dickel, Lisa. (2021) Immigration counter-acts local micro-evolution of a major fitness component: migration-selection balance in free-living song sparrows. Evolution Letters
    Academic article
  • Niskanen, Alina Katariina; Billing, Anna Maria; Holand, Håkon; Hagen, Ingerid Julie; Araya-Ajoy, Yimen; Husby, Arild. (2020) Consistent scaling of inbreeding depression in space and time in a house sparrow metapopulation. Proceedings of the National Academy of Sciences of the United States of America (PNAS)
    Academic article
  • Lundregan, Sarah L.; Niskanen, Alina K.; Muff, Stefanie; Holand, Håkon; Kvalnes, Thomas; Ringsby, Thor-Harald. (2020) Resistance to gapeworm parasite has both additive and dominant genetic components in house sparrows, with evolutionary consequences for ability to respond to parasite challenge. Molecular Ecology
    Academic article
  • Nietlisbach, Pirmin; Muff, Stefanie; Reid, Jane Margaret; Whitlock, Michael; Keller, Lukas F.. (2019) Nonequivalent lethal equivalents: Models and inbreeding metrics for unbiased estimation of inbreeding load. Evolutionary Applications
    Academic article
  • Muff, Stefanie; Niskanen, Alina Katariina; Saatoglu, Dilan; Keller, Lukas; Jensen, Henrik. (2019) Animal models with group-specific additive genetic variances: extending genetic group models. Genetics Selection Evolution
    Academic article
  • Muff, Stefanie; Signer, Johannes; Fieberg, John. (2019) Accounting for individual‐specific variation in habitat‐selection studies: Efficient estimation of mixed‐effects models using Bayesian or frequentist computation. Journal of Animal Ecology
    Academic article
  • Bozzuto, Claudio; Biebach, Iris; Muff, Stefanie; Ives, Anothony R.; Keller, Lukas F.. (2019) Inbreeding reduces long-term growth of Alpine ibex populations. Nature Ecology and Evolution
    Academic article
  • Weinberger, Irene; Muff, Stefanie; Kranz, Andreas; Bontadina, Fabio. (2019) Riparian vegetation provides crucial shelter for resting otters in a human-dominated landscape. Mammalian Biology
    Academic article
  • Muff, Stefanie. (2019) Book review for "Bayesian Regression Modeling with INLA" by Xiaofeng Wang, Yu Ryan Yue, and Julian J. Faraway. Journal of the American Statistical Association
    Book review
  • Nietlisbach, Pirmin; Muff, Stefanie; Reid, Jane M.; Whitlock, Michael; Keller, Lukas F.. (2019) Nonequivalent lethal equivalents: Models and inbreeding metrics for unbiased estimation of inbreeding load . Evolutionary Applications
    Academic article
  • Bächinger, D.; Brühlmann, C.; Honegger, T.; Michalopoulou, E.; Monge Naldi, A.; Wettstein, V.G.. (2019) Endotype-Phenotype Patterns in Meniere’s Disease Based on Gadolinium-Enhanced MRI of the Vestibular Aqueduct. Frontiers in Neurology
    Academic article
  • Ponzi, Erica; Keller, Lukas F.; Muff, Stefanie. (2019) The simulation extrapolation technique meets ecology and evolution: A general and intuitive method to account for measurement error. Methods in Ecology and Evolution
    Academic article
  • Ponzi, Erica; Keller, Lukas F.; Bonnet, Timothee; Muff, Stefanie. (2018) eritability, selection, and the response to selection in the presence of phenotypic measurement error: effects, cures, and the role of repeated measurements. Evolution
    Academic article
  • Muff, Stefanie; Puhan, Milo A.; Held, Leonhard. (2018) Bias away from the Null due to miscounted outcomes? A case study on the TORCH trial. Statistical Methods in Medical Research
    Academic article

Report

  • Singsaas, Øyvind; Muff, Stefanie. (2024) Neural networks for genomic prediction in the wild. Norges teknisk-naturvitenskapelige universitet
    Masters thesis
  • Nafstad, Ådne Messel; Jensen, Henrik; Rønning, Bernt; Muff, Stefanie; Stawski, Clare ; Räsänen, Katja. (2024) Ecological and evolutionary role of resting metabolic rate in wild house sparrow populations. Norges teknisk-naturvitenskapelige universitet
    Doctoral dissertation
  • Aase, Kenneth; Muff, Stefanie. (2021) Genetic Group Animal Models in the Genomics Era. Norwegian University of Science and Technology
    Masters thesis

Teaching

Courses

  • ISTT1002 - Statistikk
  • TMA4268 - Statistisk læring
  • MA8701 - Avanserte statistiske metoder innen inferens og læring

Outreach

2024

  • Poster
    Aase, Kenneth; Burnett, Hamish Andrew; Jensen, Henrik; Muff, Stefanie. (2024) How accurate is genomic prediction across wild populations?. 7th International Conference of Quantitative Genetics , Wien 2024-07-22 - 2024-07-26

2023

  • Documentary
    Jensen, Henrik; Muff, Stefanie; Buhaug, Maria Grankvist; Eggen, Per-Odd; Gunby, Jakob; Hallgren, Bror. (2023) Gråspurvens hemmeligheter. https://www.ntnu.no/web/skolelab/spurv https://www.ntnu.no/web/skolelab/spurv [Internet] 2023-11-30
  • Academic lecture
    Aase, Kenneth; Jensen, Henrik; Muff, Stefanie. (2023) How accurate is genomic prediction?. University of Exeter 2023 Wild Animal Models Biennial Meeting , Okehampton 2023-09-04 - 2023-09-08
  • Lecture
    Arce Guillen, Rafael; Lindgren, Finn; Muff, Stefanie; Glass, Thomas W.; Breed, Greg; Schlaegel, Ulrike. (2023) Accounting for unobserved spatial variation in step selection analyses of animal movement via spatial random effects. HTW Berlin 16th International conference of the ERCIM WG on Computational and Methodological Statistics (CMStatistics 2023) , Berlin 2023-12-16 - 2023-12-18
  • Academic lecture
    Goedert, Debora; Burnett, Hamish Andrew; Saatoglu, Fikriye Dilan; Hansson Frank, tor; Araya-Ajoy, Yimen G.; Muff, Stefanie. (2023) Underlying causes and eco-evolutionary consequences of dispersal. Squid Workshop - Brazil , Santuario Caracas 2023-11-23 - 2023-11-27
  • Academic lecture
    Goedert, Debora; Saatoglu, Fikriye Dilan; Burnett, Hamish Andrew; Muff, Stefanie; Hansson Frank, tor; Araya-Ajoy, Yimen G.. (2023) Genetic architecture of sex-biased dispersal. WAMBAM 2023-09-04 - 2023-09-08
  • Academic lecture
    Halbritter Rechsteiner, Aud Helen; Grainger, Matthew; Telford, Richard James; Kusch, Erik; Nilsen, Erlend Birkeland; Andrew, Carrie. (2023) Living Norway Course on Open, Reproducible and Transparent Science in Ecology. Living Norway Living Norway Course on Open, Reproducible and Transparent Science in Ecology , Hjerkinn 2023-11-13 - 2023-11-17

2022

  • Academic lecture
    Muff, Stefanie. (2022) Efficient mixed-effects modeling in habitat selection studies. The Wildlife Society Annual Conference 2022-11-06 - 2022-11-10
  • Lecture
    Halbritter Rechsteiner, Aud Helen; Endresen, Dag; Nilsen, Erlend Birkeland; Chipperfield, Joseph; Grainger, Matthew; Telford, Richard James. (2022) Open, Reproducible, and Transparent Science in Ecology. GBIF Norway, Living Norway Ecological Data Network, BioDATA, University of Bergen, and University of Oslo Open, Reproducible, and Transparent Science in Ecology , Finse 2022-11-14 - 2022-11-18
  • Poster
    Skarstein, Emma Sofie; Martino, Sara; Muff, Stefanie. (2022) We show how to handle missing data in INLA by generalizing exising measurement error models. The International Society for Bayesian Analysis ISBA World Meeting 2022 , Montreal 2022-06-26 - 2022-07-01
  • Poster
    Ghimire, Kiran; Burnett, Hamish Andrew; Goedert, Debora; Ranke, Peter Sjolte; Muff, Stefanie; Ringsby, Thor Harald. (2022) Effects of inbreeding on nestling fitness in an insular house sparrow metapopulation in northern Norway. Nordic Society Oikos 5th Conference of Nordic Society OIKOS 2022 , Aarhus 2022-06-07 - 2022-06-10
  • Lecture
    Muff, Stefanie. (2022) Methods for modeling data from multiple individuals - Implementation of SSFs in INLA and glmmTMB. International Statistical Ecology Conference , Cape Town 2022-06-26 -

2021

  • Documentary
    Bazilchuk, Nancy Reney; Jensen, Henrik; Ringsby, Thor Harald; Muff, Stefanie. (2021) Darwin had Galapagos finches. Norway has… house sparrows?. https://shows.acast.com/63-degrees-north/episodes/ https://shows.acast.com/63-degrees-north/episodes/ [Internet] 2021-02-26
  • Poster
    Skarstein, Emma Sofie; Muff, Stefanie. (2021) A Joint Bayesian Framework for Measurement Error and Missing Data. UiT NORDSTAT , Tromsø 2021-06-21 - 2021-06-24
  • Poster
    Siren, Jenni; Niskanen, Alina Katariina; Muff, Stefanie; Jensen, Henrik. (2021) Interactions of environment and inbreeding in house sparrows (Passer domesticus). University of Oulu 4th Symposium for Molecular Ecology and Evolution in Finland , Oulu 2021-10-05 - 2021-10-07
  • Poster
    Aspheim, Janne Cathrin Hetle; Jensen, Henrik; Reid, Jane Margaret; Bolstad, Geir Hysing; OHara, Robert Brian; Kvalnes, Thomas. (2021) Marker-based estimation of additive genetic variance using dimension-reduction techniques - methods from animal breeding adapted to wild study systems using a Bayesian framework. he 28th Nordic Conference in Mathematical Statistics , Tromsø 2021-06-21 - 2021-06-24

2020

  • Academic lecture
    Muff, Stefanie. (2020) Statistical methods in quantitative genetics. Genetic group models and marker-based regression. Centre for Advanced Study (CAS) Talk at Centre for Advanced Study (CAS) , Oslo 2020-03-17 - 2020-03-17

2019

  • Poster
    Lundregan, Sarah; Muff, Stefanie; Kvalnes, Thomas; Niskanen, Alina Katariina; Holand, Håkon; Husby, Arild. (2019) Susceptibility to gapeworm parasite has both additive and dominant genetic components in house sparrows. European Society for Evolutionary Biology (ESEB) 2019 Congress of the European Society for Evolutionary Biology (ESEB) , Turku 2019-08-19 - 2019-08-24
  • Academic lecture
    Niskanen, Alina Katariina; Billing, Anna Maria; Holand, Håkon; Hagen, Ingerid Julie; Huisman, Jisca; Araya-Ajoy, Yimen. (2019) Inbreeding depression in a house sparrow metapopulation. University of Oulu Molecular Ecology and Evolution Lab meeting , Oulu 2019-01-24 - 2019-01-24

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