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  1. Employees

Språkvelger

Norsk

Emil Karlsen

Download press photo
Download press photo
Foto:

Emil Karlsen


emil.karlsen@ntnu.no
Kjemi 4, 4.059, Gløshaugen
About Publications Outreach

About

Affiliation:

AlmaasLab

 

Background:

M.Sc. in Biotechnology, NTNU

Ph.D. in Biotechnology, NTNU

Publications

  • Chronological
  • By category
  • See all publications in Cristin

2023

  • Karlsen, Emil; Gylseth, Marianne Cieslik; Schulz, Christian; Almaas, Eivind. (2023) A study of a diauxic growth experiment using an expanded dynamic flux balance framework. PLOS ONE
    Academic article

2022

  • Simensen, Vetle; Schulz, Christian; Karlsen, Emil; Bråtelund, Signe; Burgos, Idun Maria Tokvam; Thorfinnsdottir, Lilja Brekke. (2022) Experimental determination of Escherichia coli biomass composition for constraint-based metabolic modeling. PLOS ONE
    Academic article

2021

  • Voigt, Andre; Martyushenko, Nikolay; Karlsen, Emil; Hall, Martina; Nyhamar, Kristen; Omholt, Stig William. (2021) Containing pandemics through targeted testing of households. BMC Infectious Diseases
    Academic article
  • Schulz, Christian; Kumelj, Tjasa; Karlsen, Emil; Almaas, Eivind. (2021) Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition. PLoS Computational Biology
    Academic article

2018

  • Karlsen, Emil; Schulz, Christian; Almaas, Eivind. (2018) Automated generation of genome-scale metabolic draft reconstructions based on KEGG. BMC Bioinformatics
    Academic article

Journal publications

  • Karlsen, Emil; Gylseth, Marianne Cieslik; Schulz, Christian; Almaas, Eivind. (2023) A study of a diauxic growth experiment using an expanded dynamic flux balance framework. PLOS ONE
    Academic article
  • Simensen, Vetle; Schulz, Christian; Karlsen, Emil; Bråtelund, Signe; Burgos, Idun Maria Tokvam; Thorfinnsdottir, Lilja Brekke. (2022) Experimental determination of Escherichia coli biomass composition for constraint-based metabolic modeling. PLOS ONE
    Academic article
  • Voigt, Andre; Martyushenko, Nikolay; Karlsen, Emil; Hall, Martina; Nyhamar, Kristen; Omholt, Stig William. (2021) Containing pandemics through targeted testing of households. BMC Infectious Diseases
    Academic article
  • Schulz, Christian; Kumelj, Tjasa; Karlsen, Emil; Almaas, Eivind. (2021) Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition. PLoS Computational Biology
    Academic article
  • Karlsen, Emil; Schulz, Christian; Almaas, Eivind. (2018) Automated generation of genome-scale metabolic draft reconstructions based on KEGG. BMC Bioinformatics
    Academic article

Outreach

2022

  • Poster
    Schulz, Christian; Simensen, Vetle; Karlsen, Emil; Almaas, Eivind. (2022) Analyzing the Biomass for an organism. DLN conference , Trondheim 2022-10-20 - 2022-10-21
  • Poster
    Schulz, Christian; Simensen, Vetle; Karlsen, Emil; Almaas, Eivind. (2022) Analyzing the Biomass for an organism. Cobra conference , Galway 2022-09-28 - 2022-09-30
  • Poster
    Karlsen, Emil; Gylseth, Marianne; Schulz, Christian; Almaas, Eivind. (2022) Investigating Diauxic Growth Using Dynamic Enzyme-Constrained Flux Balance Analysis. 8th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2022) | AIChE , Galway 2022-09-28 - 2022-09-30

2021

  • Academic lecture
    Karlsen, Emil; Almaas, Eivind. (2021) Modeling bacteria for production of sustainable bioconcrete. Department of Biotechnology and Food Science (NTNU) Regular department seminar, IBT NTNU , NTNU Trondheim 2021-04-28 - 2021-04-28

2019

  • Poster
    Karlsen, Emil; Almaas, Eivind. (2019) Metabolic modeling for microbial production of bio-concrete . NBS Contact Meeting 2019 2019-01-24 - 2019-01-27
  • Poster
    Zehner, Jennifer Simone; Karlsen, Emil; Razbani, Mohammad Amin; Jettestuen, Espen; Malthe-Sørensen, Anders; Wentzel, Alexander. (2019) The quest for bio-concrete: crossing disciplinary boundaries and wrangling bacteria to enable cleaner construction. DigitalLife 2019 2019-09-05 - 2019-09-06
  • Poster
    Schulz, Christian; Karlsen, Emil; Kumar, Kanhaiya; Bartosova, Zdenka; Schmid, Jochen; Bruheim, Per. (2019) Measuring Biomass Composition for Modelling. DLN anual conference 2019-09-05 - 2019-09-06

2018

  • Academic lecture
    Karlsen, Emil; Schulz, Christian; Almaas, Eivind. (2018) Automatic assembly of genome-scale metabolic draft reconstructions from KEGG data. NORBIS NORBIS Annual Conference 2018 , Voss 2018-10-17 - 2018-10-19
  • Academic lecture
    Almaas, Eivind; Karlsen, Emil; Schulz, Christian; Martyushenko, Nikolay. (2018) Dynamic FBA with Global Constraints on Cellular Protein Fraction. 5th Conference on Constraint-Based Reconstruction and Analysis , Seattle 2018-10-14 - 2018-10-16
  • Academic lecture
    Karlsen, Emil; Almaas, Eivind. (2018) Modeling the developmental physiology of plants. BioCat 2nd annual BioCat conference , Hurdal 2018-06-04 - 2018-06-06
  • Academic lecture
    Karlsen, Emil; Almaas, Eivind. (2018) In silico evolution of plant-like structures. The Network Science Society NetSci 2018 Satellite: Games on Networks , Paris 2018-06-11 - 2018-06-15
  • Poster
    Karlsen, Emil; Zehner, Jennifer Simone; Razbani, Mohammad Amin; Jettestuen, Espen; Malthe-sørenssen, Anders; Wentzel, Alexander. (2018) Metabolic modelling, reactive transport modelling, and experimental verification of microbial-induced processes in the production of bio-concrete. Senter for Digitalt Liv Norge DigitalLife 2018 , Bergen 2018-03-20 - 2018-03-21

2017

  • Academic lecture
    Karlsen, Emil; Almaas, Eivind. (2017) A method for dynamic flux balance analysis with global constraints. Senter for Digitalt Liv Norge Methodologies for Digital Life - Focus on Metabolic Systems , Bergen 2017-10-06 - 2017-10-06
  • Poster
    Karlsen, Emil; Almaas, Eivind. (2017) Dynamic Flux Balance Analysis with Global Constraints. NORBIS 3rd annual meeting of NORBIS , Tromsø 2017-10-08 - 2017-10-10

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