2024

• Lefeuvre, Maël; Martin, Michael David; Jay, Flora; Marsolier, Marie-Claude; Bon, Céline. (2024) GRUPS-rs, a high-performance ancient DNA genetic relatedness estimation software relying on pedigree simulations. Human Population Genetics and Genomics
  Academic article
• Kellner, Fabian Laszlo; Le Moullec, Mathilde; Ellegaard, Martin Rene; Rosvold, Jørgen; Peeters, Bart; Burnett, Hamish Andrew. (2024) A palaeogenomic investigation of overharvest implications in an endemic wild reindeer subspecies. Molecular Ecology
  Academic article
• Hold, Katharina; Lord, Edana; Brealey, Jaelle Caitlin; Le Moullec, Mathilde; Bieker, Vanessa Carina; Ellegaard, Martin Rene. (2024) Ancient reindeer mitogenomes reveal island-hopping colonisation of the Arctic archipelagos. Scientific Reports
  Academic article
• Brealey, Jaelle Caitlin; Kodama, Miyako; Agerbo Rasmussen, Jacob; Hansen, Søren B.; Santos-Bay, Luisa; Lecaudey, Laurene Alicia. (2024) Host-gut microbiota interactions shape parasite infections in farmed Atlantic salmon. mSystems
  Academic article
• Bordenstein, Seth R.; Gilbert, Marcus Thomas Pius; Ginnan, Nichole; Malacrinò, Antonino; Martino, Maria Elena; Bahrndorf, Simon. (2024) The disciplinary matrix of holobiont biology. Uniting life’s seen and unseen realms guides a conceptual advance in research. Science
  Academic article
• Katirtzoglou, Aikaterini; Hansen, Søren B.; Sveier, Harald; Martin, Michael David; Brealey, Jaelle Caitlin; Limborg, Morten Tønsberg. (2024) Genomic context determines the effect of DNA methylation on gene expression in the gut epithelium of Atlantic salmon (Salmo salar). Epigenetics
  Academic article
• Katirtzoglou, Aikaterini; Hansen, Søren B.; Sveier, Harald; Martin, Michael David; Brealey, Jaelle C.; Limborg, Morten T.. (2024) Genomic context determines the effect of DNA methylation on gene expression in the gut epithelium of Atlantic salmon (Salmo salar). Epigenetics
  Academic article
• Meleshko, Olena; Martin, Michael David; Flatberg, Kjell Ivar; Stenøien, Hans Kristen; Korneliussen, Thorfinn Sand; Szövényi, Péter. (2024) Linked Selection and Gene Density Shape Genome-Wide Patterns of Diversification in Peatmosses. Evolutionary Applications
  Academic article
• Ellegaard, Martin Rene; Ebenesersdóttir, S. Sunna; Moore, Kristjan H.S.; Petersen, Anna Helena; Vågene, Åshild J.; Bieker, Vanessa Carina. (2024) Corroborating written history with ancient DNA: The case of the Well-man described in an Old Norse saga. iScience
  Academic article

2023

• Burnett, Hamish Andrew; Bieker, Vanessa Carina; Le Moullec, Mathilde; Peeters, Bart; Rosvold, Jørgen; Pedersen, Åshild Ønvik. (2023) Contrasting genomic consequences of anthropogenic reintroduction and natural recolonization in high-arctic wild reindeer. Evolutionary Applications
  Academic article
• Battlay, Paul; Wilson, Jonathan; Bieker, Vanessa Carina; Lee, Christopher; Prapas, Diana; Petersen, Bent. (2023) Large haploblocks underlie rapid adaptation in the invasive weed Ambrosia artemisiifolia. Nature Communications
  Academic article
• Dussex, Nicolas; Tørresen, Ole Kristian; van der Valk, Tom; Le Moullec, Mathilde; Veiberg, Vebjørn; Tooming-Klunderud, Ave. (2023) Adaptation to the High-Arctic island environment despite long-term reduced genetic variation in Svalbard reindeer. iScience
  Academic article
• Matten, Damaris Marina; Mienna, Ida Marielle; Bieker, Vanessa Carina; Mishler, Brent D.; Moen, Victoria Stornes; Nygård, Malene Østreng. (2023) Spatial patterns of phylogenetic and species diversity of fennoscandian vascular plants in protected areas. Biodiversity and Conservation
  Academic article
• Hansen, Charles Christian Riis; Láruson, Áki Jarl; Rasmussen, Jacob Agerbo; Chimal Ballesteros, Jesus Adrian; Sinding, Mikkel Holger Strander; Hallgrimsson, Gunnar T.. (2023) Genomic diversity and differentiation between island and mainland populations of white-tailed eagles (Haliaeetus albicilla). Molecular Ecology
  Academic article
• Zhang, Pei; Zhu, Yuanzhen; Guo, Qunfei; Li, Ji; Zhan, Xiaoyu; Yu, Hao. (2023) On the origin and evolution of RNA editing in metazoans. Cell reports
  Academic article
• Cerca Monteiro De Oliveira, José Pedro; Cotoras, Darko; Bieker, Vanessa Carina; De-Kayne, Rishi; Vargas, Pablo; Fernández-Mazuecos, Mario. (2023) Evolutionary genomics of oceanic island radiations. Trends in Ecology & Evolution
  Academic literature review
• Nygård, Malene Østreng; Kopatz, Alexander; Speed, James David Mervyn; Martin, Michael David; Prestø, Tommy; Kleven, Oddmund. (2023) SNP genotyping and environmental niche modelling using herbarium specimens of the northern dragonhead, Dracocephalum ruyschiana (Lamiaceae). Bauhinia
  Academic article
• Nygaard, Malene; Kopatz, Alexander; Speed, James David Mervyn; Martin, Michael David; Prestø, Tommy; Kleven, Oddmund. (2023) SNP genotyping and environmental niche modelling using herbarium specimens of the northern dragonhead, Dracocephalum ruyschiana (Lamiaceae). Bauhinia
  Abstract

2022

• Malmstrom, Carolyn; Martin, Michael David; Gagnevin, Lionel. (2022) Exploring the Emergence and Evolution of Plant Pathogenic Microbes Using Historical and Paleontological Sources. Annual Review of Phytopathology
  Academic literature review
• Brealey, Jaelle; Lecaudey, Laurene Alicia; Kodama, Miyako; Rasmussen, Jacob A.; Sveier, Harald; Dheilly, Nolwenn M.. (2022) Microbiome “Inception”: an Intestinal Cestode Shapes a Hierarchy of Microbial Communities Nested within the Host. mBio
  Academic article
• Brandslet, Steinar; Cerca Monteiro De Oliveira, José Pedro; Martin, Michael David. (2022) Darwin’s giant daises and evolution. Gemini (English edition)
  Popular scientific article
• Gopalakrishnan, Shyam; Ebenesersdottir, S.Sunna; Lundstrøm, Inge K.C.; Turner-Walker, Gordon; Moore, Kristjan H.S.; Luisi, Pierre. (2022) The population genomic legacy of the second plague pandemic. Current Biology
  Academic article
• Cerca, José; Petersen, Bent; Lazaro-Guevara, José Miguel; Rivera-Colón, Angel G.; Birkeland, Siri; Vizueta, Joel. (2022) The genomic basis of the plant island syndrome in Darwin’s giant daisies. Nature Communications
  Academic article
• Nygaard, Malene; Kopatz, Alexander; Speed, James David Mervyn; Martin, Michael David; Prestø, Tommy; Kleven, Oddmund. (2022) Spatiotemporal monitoring of the rare northern dragonhead (Dracocephalum ruyschiana, Lamiaceae) — SNP genotyping and environmental niche modeling herbarium specimens. Ecology and Evolution
  Academic article
• Hansen, Charles Christian Riis; Baleka, Sina; Magnea Guðjónsdóttir, Sólveig; Agerbo Rasmussen, Jacob; Chimal Ballesteros, Jesus Adrian; Thor Hallgrimsson, Gunnar. (2022) Erratum to: Distinctive mitogenomic lineages within populations of White-tailed Eagles(Ornithology DOI: 10.1093/ornithology/ukab081). The AUK: A Quarterly Journal of Ornithology
  Errata
• Bieker, Vanessa Carina; Battlay, Paul; Petersen, Bent; Sun, Xin; Wilson, Jonathan; Brealey, Jaelle C.. (2022) Uncovering the genomic basis of an extraordinary plant invasion. Science Advances
  Academic article

2021

• Rasmussen, Jacob A.; Villumsen, Kasper Rømer; Duchêne, David; Puetz, Lara; Delmont, Tom; Sveier, Harald. (2021) Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts. Communications Biology
  Academic article
• Aguilar Tomasini, Maria Alejandra; Martin, Michael David; Speed, James David Mervyn. (2021) Assessing spatial patterns of phylogenetic diversity of Mexican mammals for biodiversity conservation. Global Ecology and Conservation
  Academic article
• Speed, James David Mervyn; Chimal Ballesteros, Jesus Adrian; Martin, Michael David; Barrio, Isabel C.; Vuorinen, Katariina Elsa Maria; Soininen, Eeva Marjatta. (2021) Will borealization of Arctic tundra herbivore communities be driven by climate warming or vegetation change?. Global Change Biology
  Academic article
• Foote, Andrew; Hooper, Rebecca; Alexander, Alana; Baird, Robin; Baker, Charles Scott; Ballance, Lisa. (2021) Runs of homozygosity in killer whale genomes provide a global record of demographic histories. Molecular Ecology
  Academic article
• Rawlence, Nicolas J.; Knapp, Michael; Martin, Michael David; Wales, Nathan. (2021) Applied Uses of Ancient DNA. Frontiers in Ecology and Evolution
  Academic article
• Meleshko, Olena; Hassel, Kristian; Stenøien, Hans K.; Martin, Michael David. (2021) Gene flow and genome evolution in peatmosses (Sphagnum). Norges tesnisk-naturvitenskapelige universitet
  Doctoral dissertation
• Ristaino, Jean B.; Anderson, Pamela; Bebber, Daniel; Brauman, Kate; Cunniffe, Nik; Fedoroff, Nina. (2021) The persistent threat of emerging plant disease pandemics to global food security. Proceedings of the National Academy of Sciences of the United States of America (PNAS)
  Academic article
• Foote, Andrew; Gilbert, Marcus Thomas Pius; Gopalakrishnan, Shyam; Louis, Marie; Martin, Michael David; Morin, Phillip A.. (2021) Evidence of long-term purging of mutation load in killer whale genomes. bioRxiv
  Academic article
• Meleshko, Olena; Martin, Michael David; Korneliussen, Thorfinn Sand; Schröck, Christian; Lamkowski, Paul; Schmutz, Jeremy. (2021) Extensive genome-wide phylogenetic discordance is due to incomplete lineage sorting and not ongoing introgression in a rapidly radiated bryophyte genus. Molecular Biology and Evolution (MBE)
  Academic article
• Hansen, Charles Christian Riis; Baleka, Sina; Gudjonsdottir, Solveig Magnea; Rasmussen, Jacob Agerbo; Chimal Ballesteros, Jesus Adrian; Hallgrimsson, Gunnar Thor. (2021) Distinctive mitogenomic lineages within populations of White-tailed Eagles. Journal of Ornithology
  Academic article

2020

• Bieker, Vanessa Carina; Sánchez Barreiro, Fatima; Rasmussen, Jacob Agerbo; Brunier, Marie; Wales, Nathan; Martin, Michael David. (2020) Metagenomic analysis of historical herbarium specimens reveals a postmortem microbial community. Molecular Ecology Resources
  Academic article
• Kistler, Logan; Bieker, Vanessa Carina; Martin, Michael David; Pedersen, Mikkel Winther; Madrigal, Jazmín Ramos; Wales, Nathan. (2020) Ancient plant genomics in archaeology, herbaria, and the environment. Annual Review of Plant Biology
  Academic article
• Bakker, Freek T.; Martin, Michael David; Bieker, Vanessa Carina. (2020) Herbarium Collection-Based Plant Evolutionary Genetics and Genomics. Frontiers in Ecology and Evolution
  Editorial
• Barnett, Ross; Westbury, Michael V; Sandoval-Velasco, Marcela; Vieira, Filipe G.; Jeon, Sungwon; Zazula, Grant. (2020) Genomic adaptations and evolutionary history of the extinct scimitar-toothed cat, Homotherium latidens. Current Biology
  Academic article
• de Manuel, Marc; Barnett, Ross; Sandoval-Velasco, Marcela; Yamaguchi, Nobuyuki; Vieira, Filipe G.; Lisandra Zepeda Mendoza, Zepeda. (2020) The evolutionary history of extinct and living lions. Proceedings of the National Academy of Sciences of the United States of America (PNAS)
  Academic literature review
• Dehasque, Marianne; Ávila-Arcos, María C; Díez-del-Molino, David; Fumagalli, Matteo; Guschanski, Katerina; Lorenzen, Eline D.. (2020) Inference of natural selection from ancient DNA. Evolution Letters
  Academic article

2019

• Speed, James David Mervyn; Skjelbred, Ina Åsnes; Barrio, Isabel C.; Martin, Michael David; Berteaux, Dominique; Bueno, C. Guillermo. (2019) Trophic interactions and abiotic factors drive functional and phylogenetic structure of vertebrate herbivore communities across the Arctic tundra biome. Ecography
  Academic article
• Thomas, Jessica E.; Carvalho, Gary R.; Haile, James; Rawlence, Nicolas J.; Martin, Michael David; Ho, Simon Y.W.. (2019) Demographic reconstruction from ancient DNA supports rapid extinction of the great auk. eLIFE
  Academic article
• Maurice, Sundy Ursula Mary Jane; Montes, Melanie; Nielsen, Bent J.; Bødker, Lars; Martin, Michael David; Jønck, Carina. (2019) Population genomics of an outbreak of the potato late blight pathogen, Phytophthora infestans, reveals both clonality and high genotypic diversity. Molecular plant pathology
  Academic article
• Foote, Andrew D.; Martin, Michael David; Louis, Marie; Pacheco, George; Robertson, Kelly M.; Sinding, Mikkel-Holger. (2019) Killer whale genomes reveal a complex history of recurrent admixture and vicariance. Molecular Ecology
  Academic article
• Mienna, Ida Marielle; Speed, James David Mervyn; Bendiksby, Mika; Thornhill, Andrew H.; Mishler, Brent D.; Martin, Michael David. (2019) Differential patterns of floristic phylogenetic diversity across a post-glacial landscape. Journal of Biogeography
  Academic article
• Speed, James David Mervyn; Martin, Michael David; Ballesteros, Jesús A.. (2019) Patterns and relationships of the distribution of arctic and boreal forest herbivores: A three-dimensional approach. NTNU
  Masters thesis
• Østby, Nina; Martin, Michael David; Pärn, Henrik; Sæther, Bernt-Erik. (2019) DNA metabarcoding diet analysis of water vole (Arvicola amphibius) in northern Norway. NTNU Vitenskapsmuseet
  Masters thesis

2018

• Bieker, Vanessa Carina; Martin, Michael David. (2018) Implications and future prospects for evolutionary analyses of DNA in historical herbarium collections. Botany Letters
  Academic article
• O’Hanlon, Simon J; Rieux, Adrien; Farrer, Rhys A; Rosa, Gonçalo M; Waldman, Bruce; Bataille, Arnaud. (2018) Recent Asian origin of chytrid fungi causing global amphibian declines. Science
  Academic article
• Mienna, Ida Marielle; Martin, Michael David; Speed, James David Mervyn; Bendiksby, Mika. (2018) Patterns and drivers of phylogenetic diversity and endemism in the Norwegian vascular flora. NTNU
  Masters thesis
• Martin, Michael David; Quiroz-Claros, Elva; Brush, Grace S.; Zimmer, Elizabeth A.. (2018) Herbarium collection-based phylogenetics of the ragweeds (Ambrosia, Asteraceae). Molecular Phylogenetics and Evolution
  Academic article
• Niroula, Dhirendra; Bendiksby, Mika; Martin, Michael David. (2018) Global functional genomics of the Irish potato famine pathogen Phytophthora infestans. NTNU Vitenskapsmuseets webside (1)
  Masters thesis

2017

• Sánchez Barreiro, Fatima; Vieira, Filipe G.; Martin, Michael D.; Haile, James; Gilbert, Marcus Thomas Pius; Wales, Nathan. (2017) Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes. Molecular Ecology Resources
  Academic article
• Thomas, Jessica E; Carvalho, Gary R.; Haile, James; Martin, Michael David; Castruita, Jose A. Samaniego; Niemann, Jonas. (2017) An ‛Aukward’ tale: a genetic approach to discover the whereabouts of the last Great Auks. Genes
  Academic article
• Martin, Michael David; Jay, Flora; Castellano, Sergi; Slatkin, Montgomery. (2017) Determination of genetic relatedness from low-coverage human genome sequences using pedigree simulations. Molecular Ecology
  Academic article
• Grube, Martin; Gaya, Ester; Kauserud, Håvard; Smith, Adrian M.; Avery, Simon V.; Fernstad, Sara F.. (2017) The next generation fungal diversity researcher. Fungal Biology Reviews
  Academic literature review

2016

• Saville, Amanda; Martin, Michael David; Ristaino, Jean B.. (2016) Historic late blight outbreaks caused by a widespread dominant lineage of Phytophthora infestans (Mont.) de Bary. PLOS ONE
  Academic literature review
• Martin, Michael D; Vieira, Filipe G; Ho, Simon Y W; Wales, Nathan; Schubert, Mikkel; Seguin-Orlando, Andaine. (2016) Genomic characterization of a South American Phytophthora hybrid mandates reassessment of the geographic origins of Phytophthora infestans. Molecular Biology and Evolution (MBE)
  Academic article
• Martin, Michael D; Olsen, Morten T; Samaniego, Jose; Zimmer, Elizabeth A; Gilbert, Marcus Thomas Pius. (2016) The population genomic basis of geographic differentiation in North American common ragweed (Ambrosia artemisiifolia L.). Ecology and Evolution
  Academic article
• Foote, Andy; Vijay, Nagarjun; Avila-Arcos, Maria; Baird, Robin; Durban, John; Morin, Phillip. (2016) Genome-culture coevolution drives rapid divergence in the killer whale. Nature Communications
  Academic article

2015

• Der Sarkissian, Clio; Allentoft, M; Campos, Paula F; Cappellini, Enrico; Ermini, Luca; Fernandez, Ruth. (2015) Ancient genomics. Philosophical Transactions of the Royal Society of London. Biological Sciences
  Academic literature review

2014

• Schubert, Mikkel; Ermini, Luca; Der Sarkissian, Clio; Jónsson, Hákon; Ginolhac, Aurélien; Schaefer, Robert. (2014) Characterizing ancient genomes: from sequence reads to SNP detection, phylogenomics, and metagenomics analyses. Nature Protocols
  Academic article
• Martin, Michael D; Zimmer, Elizabeth A; Olsen, Morten T; Foote, Andrew D; Gilbert, M Thomas P; Brush, Grace S. (2014) Herbarium specimens reveal a phylogeographic shift in common ragweed during native range disturbance. Molecular Ecology
  Academic article
• Martin, Michael D; Ho, Simon Y W; Wales, Nathan; Ristaino, Jean B; Gilbert, M Thomas P. (2014) Persistence of the mitochondrial lineage of the Irish potato famine pathogen in the New World. Molecular Biology and Evolution (MBE)
  Academic article
• Zhang, Guojie; Martin, Michael D; et al., -. (2014) Comparative genomics reveals insights into avian genome evolution and adaptation. Science
  Academic article

2013

• Martin, Michael D; Cappellini, Enrico; Samaniego, Jose; Zepeda, M. Lisandra; Campos, Paula F; Seguin-Orlando, Andaine. (2013) Reconstructing genome evolution in historic samples of the Irish potato famine pathogen. Nature Communications
  Academic article

2010

• Martin, Michael D; Chamecki, Marcelo; Brush, Grace. (2010) Anthesis synchronization and floral morphology determine diurnal patterns of ragweed pollen dispersal. Agricultural and Forest Meteorology
  Academic article

2009

• Martin, Michael D; Chamecki, Marcelo; Brush, Grace; Meneveau, Charles; Parlange, Marc. (2009) Pollen clumping and wind dispersal in an invasive angiosperm. American Journal of Botany
  Academic article